Publications

Found 26 results
Filters: Author is Hud, Nicholas V and Keyword is DNA  [Clear All Filters]
2014
G. Portella, Germann, M. W., Hud, N. V., and Orozco, M., “MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents.”, J Am Chem Soc, vol. 136, no. 8, pp. 3075-86, 2014.
2013
E. Kuruvilla, Schuster, G. B., and Hud, N. V., “Enhanced nonenzymatic ligation of homopurine miniduplexes: support for greater base stacking in a pre-RNA world.”, ChemBioChem, vol. 14, no. 1, pp. 45-8, 2013.
2012
F. M. Lannan, Mamajanov, I., and Hud, N. V., “Human telomere sequence DNA in water-free and high-viscosity solvents: G-quadruplex folding governed by Kramers rate theory.”, J Am Chem Soc, vol. 134, no. 37, pp. 15324-30, 2012.
A. E. Engelhart, Cafferty, B. J., C Okafor, D., Chen, M. C., Williams, L. Dean, Lynn, D. G., and Hud, N. V., “Nonenzymatic ligation of DNA with a reversible step and a final linkage that can be used in PCR.”, ChemBioChem, vol. 13, no. 8, pp. 1121-4, 2012.
2011
R. Buckley, C Enekwa, D., Williams, L. Dean, and Hud, N. V., “Molecular recognition of Watson-Crick-like purine-purine base pairs.”, Chembiochem, vol. 12, no. 14, pp. 2155-8, 2011.
2010
I. Mamajanov, Engelhart, A. E., Bean, H. D., and Hud, N. V., “DNA and RNA in anhydrous media: duplex, triplex, and G-quadruplex secondary structures in a deep eutectic solvent.”, Angew Chem Int Ed Engl, vol. 49, no. 36, pp. 6310-4, 2010.
2009
A. G. Tsai, Engelhart, A. E., Hatmal, M. 'monM., Houston, S. I., Hud, N. V., Haworth, I. S., and Lieber, M. R., “Conformational variants of duplex DNA correlated with cytosine-rich chromosomal fragile sites.”, J Biol Chem, vol. 284, no. 11, pp. 7157-64, 2009.
I. Suk Joung, Cetinkol, O. Persil, Hud, N. V., and Cheatham, T. E., “Molecular dynamics simulations and coupled nucleotide substitution experiments indicate the nature of A{middle dot}A base pairing and a putative structure of the coralyne-induced homo-adenine duplex.”, Nucleic Acids Res, vol. 37, no. 22, pp. 7715-27, 2009.
2008
O. Persil Cetinkol, Engelhart, A. E., Nanjunda, R. K., W Wilson, D., and Hud, N. V., “Submicromolar, selective G-quadruplex ligands from one pot: thermodynamic and structural studies of human telomeric DNA binding by azacyanines.”, ChemBioChem, vol. 9, no. 12, pp. 1889-92, 2008.
2007
T. Sarkar, Vitoc, I., Mukerji, I., and Hud, N. V., “Bacterial protein HU dictates the morphology of DNA condensates produced by crowding agents and polyamines.”, Nucleic Acids Res, vol. 35, no. 3, pp. 951-61, 2007.
O. Persil and Hud, N. V., “Harnessing DNA intercalation.”, Trends Biotechnol, vol. 25, no. 10, pp. 433-6, 2007.
P. Podbevsek, Hud, N. V., and Plavec, J., “NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution.”, Nucleic Acids Res, vol. 35, no. 8, pp. 2554-63, 2007.
2006
E. D. Horowitz and Hud, N. V., “Ethidium and proflavine binding to a 2',5'-linked RNA duplex.”, J Am Chem Soc, vol. 128, no. 48, pp. 15380-1, 2006.
I. D. Vilfan, Conwell, C. C., Sarkar, T., and Hud, N. V., “Time study of DNA condensate morphology: implications regarding the nucleation, growth, and equilibrium populations of toroids and rods.”, Biochemistry, vol. 45, no. 26, pp. 8174-83, 2006.
2005
T. Sarkar, Conwell, C. C., Harvey, L. C., Santai, C. T., and Hud, N. V., “Condensation of oligonucleotides assembled into nicked and gapped duplexes: potential structures for oligonucleotide delivery.”, Nucleic Acids Res, vol. 33, no. 1, pp. 143-51, 2005.
N. V. Hud and Vilfan, I. D., “Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size.”, Annu Rev Biophys Biomol Struct, vol. 34, pp. 295-318, 2005.
2004
O. Persil, Santai, C. T., Jain, S. S., and Hud, N. V., “Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding.”, J Am Chem Soc, vol. 126, no. 28, pp. 8644-5, 2004.
J. T. Petty, Zheng, J., Hud, N. V., and Dickson, R. M., “DNA-templated Ag nanocluster formation.”, J Am Chem Soc, vol. 126, no. 16, pp. 5207-12, 2004.
S. S. Jain, Anet, F. A. L., Stahle, C. J., and Hud, N. V., “Enzymatic behavior by intercalating molecules in a template-directed ligation reaction.”, Angew Chem Int Ed Engl, vol. 43, no. 15, pp. 2004-8, 2004.
I. D. Vilfan, Conwell, C. C., and Hud, N. V., “Formation of native-like mammalian sperm cell chromatin with folded bull protamine.”, J Biol Chem, vol. 279, no. 19, pp. 20088-95, 2004.
2003
S. S. Jain, Polak, M., and Hud, N. V., “Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation.”, Nucleic Acids Res, vol. 31, no. 15, pp. 4608-15, 2003.
C. C. Conwell, Vilfan, I. D., and Hud, N. V., “Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength.”, Proc Natl Acad Sci U S A, vol. 100, no. 16, pp. 9296-301, 2003.
N. V. Hud and Plavec, J., “A unified model for the origin of DNA sequence-directed curvature.”, Biopolymers, vol. 69, no. 1, pp. 144-58, 2003.
2002
N. V. Hud and Feigon, J., “Characterization of divalent cation localization in the minor groove of the A(n)T(n) and T(n)A(n) DNA sequence elements by (1)H NMR spectroscopy and manganese(II).”, Biochemistry, vol. 41, no. 31, pp. 9900-10, 2002.
M. Polak and Hud, N. V., “Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne.”, Nucleic Acids Res, vol. 30, no. 4, pp. 983-92, 2002.

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