Publications

Found 15 results
Filters: Author is Hud, Nicholas V and Keyword is Models, Molecular  [Clear All Filters]
2014
A. S. Petrov, Bernier, C. R., Gulen, B., Waterbury, C. C., Hershkovits, E., Hsiao, C., Harvey, S. C., Hud, N. V., Fox, G. E., Wartell, R. M., and Williams, L. Dean, “Secondary structures of rRNAs from all three domains of life.”, PLoS One, vol. 9, no. 2, p. e88222, 2014.
2013
B. J. Cafferty, Gállego, I., Chen, M. C., Farley, K. I., Eritja, R., and Hud, N. V., “Efficient self-assembly in water of long noncovalent polymers by nucleobase analogues.”, J Am Chem Soc, vol. 135, no. 7, pp. 2447-50, 2013.
C. Hsiao, Lenz, T. K., Peters, J. K., Fang, P. - Y., Schneider, D. M., Anderson, E. J., Preeprem, T., Bowman, J. C., O'Neill, E. B., Lie, L., Athavale, S. S., J Gossett, J., Trippe, C., Murray, J., Petrov, A. S., Wartell, R. M., Harvey, S. C., Hud, N. V., and Williams, L. Dean, “Molecular paleontology: a biochemical model of the ancestral ribosome.”, Nucleic Acids Res, vol. 41, no. 5, pp. 3373-85, 2013.
N. V. Hud, Cafferty, B. J., Krishnamurthy, R., and Williams, L. Dean, “The origin of RNA and "My Grandfather's Axe".”, Chem Biol, vol. 20, no. 4, pp. 466-74, 2013.
2012
T. Maehigashi, Hsiao, C., Woods, K. Kruger, Moulaei, T., Hud, N. V., and Williams, L. Dean, “B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.”, Nucleic Acids Res, vol. 40, no. 8, pp. 3714-22, 2012.
J. C. Bowman, Lenz, T. K., Hud, N. V., and Williams, L. Dean, “Cations in charge: magnesium ions in RNA folding and catalysis.”, Curr Opin Struct Biol, vol. 22, no. 3, pp. 262-72, 2012.
A. S. Petrov, Bernier, C. R., Hsiao, C., C Okafor, D., Tannenbaum, E., Stern, J., Gaucher, E., Schneider, D., Hud, N. V., Harvey, S. C., and Williams, L. Dean, “RNA-magnesium-protein interactions in large ribosomal subunit.”, J Phys Chem B, vol. 116, no. 28, pp. 8113-20, 2012.
2011
R. Buckley, C Enekwa, D., Williams, L. Dean, and Hud, N. V., “Molecular recognition of Watson-Crick-like purine-purine base pairs.”, Chembiochem, vol. 12, no. 14, pp. 2155-8, 2011.
2007
N. V. Hud, Jain, S. S., Li, X., and Lynn, D. G., “Addressing the problems of base pairing and strand cyclization in template-directed synthesis: a case for the utility and necessity of 'molecular midwives' and reversible backbone linkages for the origin of proto-RNA.”, Chem Biodivers, vol. 4, no. 4, pp. 768-83, 2007.
P. Podbevsek, Hud, N. V., and Plavec, J., “NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution.”, Nucleic Acids Res, vol. 35, no. 8, pp. 2554-63, 2007.
2006
I. D. Vilfan, Conwell, C. C., Sarkar, T., and Hud, N. V., “Time study of DNA condensate morphology: implications regarding the nucleation, growth, and equilibrium populations of toroids and rods.”, Biochemistry, vol. 45, no. 26, pp. 8174-83, 2006.
2004
S. S. Jain, Anet, F. A. L., Stahle, C. J., and Hud, N. V., “Enzymatic behavior by intercalating molecules in a template-directed ligation reaction.”, Angew Chem Int Ed Engl, vol. 43, no. 15, pp. 2004-8, 2004.
2003
N. V. Hud and Plavec, J., “A unified model for the origin of DNA sequence-directed curvature.”, Biopolymers, vol. 69, no. 1, pp. 144-58, 2003.
2002
N. V. Hud and Feigon, J., “Characterization of divalent cation localization in the minor groove of the A(n)T(n) and T(n)A(n) DNA sequence elements by (1)H NMR spectroscopy and manganese(II).”, Biochemistry, vol. 41, no. 31, pp. 9900-10, 2002.
M. Crnugelj, Hud, N. V., and Plavec, J., “The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.”, J Mol Biol, vol. 320, no. 5, pp. 911-24, 2002.